Clustal

Clustalx  v.2 1

Clustal X is a windows interface for the ClustalW multiple sequence alignment program. It provides an integrated environment for performing multiple sequence and profile alignments and analysing the results.

• Category: Utilities
• Developer: European Bioinformatics Institute - Download - Free

CLC Sequence Viewer  v.6. 5. 2003

CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.

• Category: Multimedia & Graphic Design
• Developer: CLC bio A/S - Download - Free

• clc - bio - bioinformatics - solutions - hardware

SeqVerter  v.2.0.4.3

SeqVerter is a free sequence file format conversion utility by GeneStudio, Inc. SeqVerter encapsulates a small subset of the features offered by the GeneStudio™ Pro suite of programs.

• Category: Personal and Home
• Developer: GeneStudio, Inc. - Download - Free

• abi - alignment - amino acid - analysis - automated

Primer Premier  v.6 10

Primer Premier is a comprehensive primer design application.PCR primer design- design primer pairs for PCR and multiplex experiments.Cross species- Amplify sequences from multiple species.

• Category: Utilities
• Developer: PREMIER Biosoft International - Download - Buy: $1185.00

• pcr primer design - primer design - primer design software - pcr primer design software - design multiplex primers

Unipro UGENE  v.1. 9. 2002

UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install.

• Category: Utilities
• Developer: Unipro, Russia - Download - Free

• open source - opensource - bioinformatics - visual interface - molecular biology

GeneStudio  v.2.1.2.4

GeneStudio™ Pro is a modern suite of molecular biology applications for the Windows platform built on sequence format conversion engine, SeqVerter™.

• Category: Utilities
• Developer: GeneStudio, Inc. - Download - Price: -

• abi - alf - alignment - ambiguity - amino acid

DnaSP (DNA Sequence Polymorphism)  v.5.10.01

Nucleotide polymorphism analysis made easy. DnaSP (DNA Sequence Polymorphism), is a utility package for the analysis of nucleotide polymorphism from aligned DNA sequence data.

• Category: Miscellaneous
• Developer: ub.edu - Download - Free

Jalview  v.2.7

Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) but is available as a general purpose alignment editor.Jalview Features: 1.

• Category: Miscellaneous
• Developer: jalview.org - Download - Free

FASTML  v.2.02

FASTML is a software for computing the ancestral amino-acid sequences of a phylogenetic tree.FASTML uses flags in the command line arguments: -For help, type "fastml.exe -h" -s seq.aln = the sequence input file name. -t tree.txt = the input tree file

• Category: Miscellaneous
• Developer: new.tau.ac.il - Download - Free

Patristic  v.1.0

Patristic is a Java software that uses as input different tree files and computes their patristic distances. Patristic allows saving and editing in different ways those distances.

• Category: Miscellaneous
• Developer: bioinformatics.org - Download - Free

• bioinformatics - computational biology - community - research - development